FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index7_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 21762435 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAAGA | 4711695 | 2.5928192 | 5.111257 | 2 |
| CCAGG | 4547070 | 2.568162 | 5.489817 | 1 |
| CCTGG | 4562065 | 2.5634394 | 6.0668454 | 1 |
| CTTCT | 4790100 | 2.5578666 | 5.9856954 | 1 |
| AAGAA | 4703095 | 2.535969 | 5.0793095 | 2 |
| CTGGA | 4436155 | 2.4604836 | 9.284813 | 1 |
| CTGCT | 4324420 | 2.3687832 | 5.2643657 | 1 |
| TCCAG | 4293430 | 2.3639104 | 5.5341673 | 2 |
| CTCCT | 4246425 | 2.3090527 | 7.4539185 | 1 |
| CTGGG | 4017815 | 2.2742522 | 8.872868 | 1 |
| CAGGA | 4008085 | 2.2344975 | 5.598835 | 1 |
| CTTCA | 4142970 | 2.2236903 | 6.104163 | 1 |
| CTCCA | 3999800 | 2.1861393 | 7.9176617 | 1 |
| CCCAG | 3861480 | 2.1649978 | 7.275337 | 1 |
| CAGAA | 3872870 | 2.1156359 | 5.2584424 | 1 |
| CTCTG | 3718290 | 2.0367641 | 6.7005525 | 1 |
| CTGGC | 3354460 | 1.8848822 | 5.524185 | 1 |
| CTGAA | 3437595 | 1.8682439 | 6.032749 | 1 |
| TGGAA | 3411865 | 1.8679178 | 5.2544265 | 2 |
| CTTTT | 3475005 | 1.8222659 | 5.357438 | 1 |
| CTCAG | 3166170 | 1.7432549 | 6.4766426 | 1 |
| CTGAG | 3135365 | 1.7390091 | 5.17674 | 1 |
| CTTTG | 3187840 | 1.7148138 | 5.4590516 | 1 |
| CTGGT | 3040915 | 1.6779879 | 5.354029 | 1 |
| CTTGG | 2978385 | 1.6434838 | 5.621791 | 1 |
| CTCCC | 2790320 | 1.545046 | 5.011553 | 1 |